diff tools/venn_list/README.rst @ 11:679b6323db03 draft

v0.1.0 now using matplotlib_venn instead of limma R package via rpy. Contribution from Frederic Sapet.

--- a/tools/venn_list/README.rst	Thu May 11 07:02:57 2017 -0400
+++ b/tools/venn_list/README.rst	Wed May 29 04:45:19 2019 -0400
@@ -33,8 +33,8 @@
 The suggested location is in the Galaxy folder ``tools/plotting`` next to other
 graph drawing tools, or a dedicated ``tools/venn_list`` directory.
 
-You will also need to install Biopython 1.54 or later, and the R/Bioconductor
-package limma. You should already have rpy installed for other Galaxy tools.
+You will also need to install Biopython 1.54 or later, matplotlib, and
+matplotlib_venn - all available via PyPI or Conda,
 
 You will also need to modify the ``tools_conf.xml`` file to tell Galaxy to offer the
 tool. The suggested location is in the "Graph/Display Data" section. Simply add
@@ -79,6 +79,10 @@
         - Single quote command line arguments (internal change only)
         - Python 3 compatible print function.
         - Capture python script version when run from Galaxy.
+v0.0.12 - Internal Python style change.
+        - Python 3 compatible exception handling.
+v0.1.0  - Now uses Python library matplotlib_venn to draw the diagram
+          instead of R's limma via rpy). Contribution from Frederic Sapet.
 ======= ======================================================================
 
 
@@ -107,7 +111,7 @@
 
     $ planemo shed_upload --tar_only tools/venn_list/
     ...
-    $ tar -tzf shed_upload.tar.gz 
+    $ tar -tzf shed_upload.tar.gz
     tools/venn_list/README.rst
     tools/venn_list/tool_dependencies.xml
     tools/venn_list/venn_list.py