Mercurial > repos > peterjc > venn_list
diff tools/venn_list/README.rst @ 12:e13206029a72 draft default tip
v0.1.1, removed legacy tool_dependencies.xml - use conda for dependencies
author | peterjc |
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date | Wed, 29 May 2019 06:03:59 -0400 |
parents | 679b6323db03 |
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--- a/tools/venn_list/README.rst Wed May 29 04:45:19 2019 -0400 +++ b/tools/venn_list/README.rst Wed May 29 06:03:59 2019 -0400 @@ -54,35 +54,36 @@ ======= ====================================================================== Version Changes ------- ---------------------------------------------------------------------- -v0.0.3 - Initial public release. -v0.0.4 - Ignore blank lines when loading IDs from tabular files -v0.0.5 - Explicit Galaxy error handling of return codes +v0.1.1 - Removed legacy ``tool_dependencies.xml`` file (the legacy Galaxy + packages did not cover matplotlib_venn anyway). +v0.1.0 - Now uses Python library matplotlib_venn to draw the diagram + instead of R's limma via rpy). Contribution from Frederic Sapet. +v0.0.12 - Internal Python style change. + - Python 3 compatible exception handling. +v0.0.11 - Use ``<command detect_errors="aggressive">`` (internal change only). + - Single quote command line arguments (internal change only) + - Python 3 compatible print function. + - Capture python script version when run from Galaxy. +v0.0.10 - Updated to point at Biopython 1.67 (latest version in Tool Shed). + - Explicit dependency on ``galaxy_sequence_utils``. + - Python style updates (internal change only). +v0.0.9 - Test with three-way Venn diagram. + - Includes testing of failure mode. + - Planemo for Tool Shed upload (``.shed.yml``, internal change only). +v0.0.8 - Reorder XML elements (internal change only). + - Fixed and improved error handling when rpy is not available. + - Test output relaxed to cope with more variation in PDF output. + - Declare Biopython dependency via the Tool Shed. +v0.0.7 - Renamed folder and README file. + - Tool definition now embeds citation information. v0.0.6 - Added unit tests. - Use reStructuredText for this README file. - Adopt standard MIT licence. - Updated citation information (Cock et al. 2013). - Development moved to GitHub, https://github.com/peterjc/pico_galaxy -v0.0.7 - Renamed folder and README file. - - Tool definition now embeds citation information. -v0.0.8 - Reorder XML elements (internal change only). - - Fixed and improved error handling when rpy is not available. - - Test output relaxed to cope with more variation in PDF output. - - Declare Biopython dependency via the Tool Shed. -v0.0.9 - Test with three-way Venn diagram. - - Includes testing of failure mode. - - Planemo for Tool Shed upload (``.shed.yml``, internal change only). - - Tool Shed dependency for rpy and limma (thanks to Björn Grüning). -v0.0.10 - Updated to point at Biopython 1.67 (latest version in Tool Shed). - - Explicit dependency on ``galaxy_sequence_utils``. - - Python style updates (internal change only). -v0.0.11 - Use ``<command detect_errors="aggressive">`` (internal change only). - - Single quote command line arguments (internal change only) - - Python 3 compatible print function. - - Capture python script version when run from Galaxy. -v0.0.12 - Internal Python style change. - - Python 3 compatible exception handling. -v0.1.0 - Now uses Python library matplotlib_venn to draw the diagram - instead of R's limma via rpy). Contribution from Frederic Sapet. +v0.0.5 - Explicit Galaxy error handling of return codes +v0.0.4 - Ignore blank lines when loading IDs from tabular files +v0.0.3 - Initial public release. ======= ======================================================================