Mercurial > repos > petr-novak > dante

comparison configuration.py @ 7:888361a4a39c draft

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author petr-novak
date Wed, 03 Jul 2019 07:58:08 -0400
parents 6a92134a105b
children cc10173bd0c5
comparison
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6:6dcecbe81d78 7:888361a4a39c
113 WITH_DOMAINS = "mobile_element" 113 WITH_DOMAINS = "mobile_element"
114 QUALITY_DIFF_TO_REMOVE = 0.05 # 5% tolerance of PID 114 QUALITY_DIFF_TO_REMOVE = 0.05 # 5% tolerance of PID
115 115
116 ######### DANTE ############################################## 116 ######### DANTE ##############################################
117 MAIN_GIT_DIR = os.path.dirname(os.path.realpath(__file__)) 117 MAIN_GIT_DIR = os.path.dirname(os.path.realpath(__file__))
118 DOMAINS_DATA = os.path.join(MAIN_GIT_DIR, "domains_data") 118 TOOL_DATA = os.path.join(MAIN_GIT_DIR, "tool-data")
119 TMP = "tmp" 119 TMP = "tmp"
120 SC_MATRIX = os.path.join(DOMAINS_DATA, "blosum80.txt") 120 SC_MATRIX = os.path.join(TOOL_DATA, "blosum80.txt")
121 AMBIGUOUS_TAG = "Ambiguous_domain" 121 AMBIGUOUS_TAG = "Ambiguous_domain"
122 ## IO 122 ## IO
123 CLASS_FILE = "ALL.classification-new" 123 CLASS_FILE = "ALL.classification-new"
124 LAST_DB_FILE = "ALL_protein-domains_05.fasta" 124 LAST_DB_FILE = "ALL_protein-domains_05.fasta"
125 DOM_PROT_SEQ = "dom_prot_seq.fa" 125 DOM_PROT_SEQ = "dom_prot_seq.fa"