Mercurial > repos > petr-novak > dante_ltr

comparison clean_dante_ltr.xml @ 15:0ea5d893a057 draft

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"planemo upload commit 76d9b1733a4983e3e258c096b1e1131801ffd427"
author petr-novak
date Wed, 26 Apr 2023 06:01:25 +0000
parents 3b3a87915ef6
children 7ec262f92d89
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14:3b3a87915ef6 15:0ea5d893a057
1 <tool id="clean_dante_ltr" name="DANTE_LTR retrotransposons filtering" version="0.2.2.0" python_template_version="3.5"> 1 <tool id="clean_dante_ltr" name="DANTE_LTR retrotransposons filtering" version="0.2.2.2" python_template_version="3.5">
2 <requirements> 2 <requirements>
3 <requirement type="package">dante_ltr=0.2.2.0</requirement> 3 <requirement type="package">dante_ltr=0.2.2.2</requirement>
4 </requirements> 4 </requirements>
5 <command detect_errors="exit_code"><![CDATA[ 5 <command detect_errors="exit_code"><![CDATA[
6 clean_ltr.R --gff3 '$dante_ltr' --reference_sequence '$reference' --output output --cpu \${GALAXY_SLOTS:-1} 6 clean_ltr.R --gff3 '$dante_ltr' --reference_sequence '$reference' --output output --cpu \${GALAXY_SLOTS:-1}
7 && 7 &&
8 mv output_clean.gff3 $dante_ltr_clean 8 mv output_clean.gff3 $dante_ltr_clean