Mercurial > repos > petr-novak > dante_ltr
comparison tests.sh @ 13:559940c04c44 draft
"planemo upload commit 139c041f671459192beb10ae45a8b371367c23b6"
| author | petr-novak |
|---|---|
| date | Thu, 11 Aug 2022 07:29:06 +0000 |
| parents | ff01d4263391 |
| children |
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| 12:ff01d4263391 | 13:559940c04c44 |
|---|---|
| 39 ./detect_putative_ltr_wrapper.py -s test_data/sample_genome.fasta \ | 39 ./detect_putative_ltr_wrapper.py -s test_data/sample_genome.fasta \ |
| 40 -g test_data/sample_DANTE.gff3 -o tmp/test_output5 -c $NCPU_TO_USE \ | 40 -g test_data/sample_DANTE.gff3 -o tmp/test_output5 -c $NCPU_TO_USE \ |
| 41 -S 10000000 | 41 -S 10000000 |
| 42 cat tmp/test_output5_statistics.csv | 42 cat tmp/test_output5_statistics.csv |
| 43 | 43 |
| 44 echo "Running tests 4, filtering gff" | 44 echo "Running tests 6, filtering gff" |
| 45 ./clean_ltr.R -g tmp/test_output5.gff3 -s test_data/sample_genome.fasta \ | 45 ./clean_ltr.R -g tmp/test_output5.gff3 -s test_data/sample_genome.fasta \ |
| 46 -o tmp/test_output6 -c $NCPU_TO_USE | 46 -o tmp/test_output6 -c $NCPU_TO_USE |
| 47 | |
| 48 /detect_putative_ltr_wrapper.py -s test_data/sample_genome_part.fasta \ | |
| 49 -g test_data/sample_DANTE_part.gff3 -o tmp/test_output7 -c $NCPU_TO_USE \ | |
| 50 -S 10000000 -M 2 |