Mercurial > repos > petr-novak > dante_ltr
comparison clean_dante_ltr.xml @ 16:7ec262f92d89 draft
planemo upload commit ba9c740b818bbd5b5a7a5e2afbea827f5bb91419
author | petr-novak |
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date | Wed, 10 May 2023 13:07:41 +0000 |
parents | 0ea5d893a057 |
children | d1c3b29b1478 |
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15:0ea5d893a057 | 16:7ec262f92d89 |
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1 <tool id="clean_dante_ltr" name="DANTE_LTR retrotransposons filtering" version="0.2.2.2" python_template_version="3.5"> | 1 <tool id="clean_dante_ltr" name="DANTE_LTR retrotransposons filtering" version="0.2.2.4" python_template_version="3.5"> |
2 <requirements> | 2 <requirements> |
3 <requirement type="package">dante_ltr=0.2.2.2</requirement> | 3 <requirement type="package" version="0.2.2.4">dante_ltr</requirement> |
4 </requirements> | 4 </requirements> |
5 <command detect_errors="exit_code"><![CDATA[ | 5 <command detect_errors="exit_code"><![CDATA[ |
6 clean_ltr.R --gff3 '$dante_ltr' --reference_sequence '$reference' --output output --cpu \${GALAXY_SLOTS:-1} | 6 clean_ltr.R --gff3 '$dante_ltr' --reference_sequence '$reference' --output output --cpu \${GALAXY_SLOTS:-1} |
7 && | 7 && |
8 mv output_clean.gff3 $dante_ltr_clean | 8 mv output_clean.gff3 $dante_ltr_clean |