Mercurial > repos > petr-novak > dante_ltr
diff clean_dante_ltr.xml @ 14:3b3a87915ef6 draft
"planemo upload commit 2b4592de91793d6bbe4182d4ca9ee749d361fd82-dirty"
| author | petr-novak |
|---|---|
| date | Mon, 30 Jan 2023 10:05:47 +0000 |
| parents | 559940c04c44 |
| children | 0ea5d893a057 |
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--- a/clean_dante_ltr.xml Thu Aug 11 07:29:06 2022 +0000 +++ b/clean_dante_ltr.xml Mon Jan 30 10:05:47 2023 +0000 @@ -1,14 +1,9 @@ -<tool id="clean_dante_ltr" name="DANTE_LTR retrotransposons filtering" version="0.1.8.0" python_template_version="3.5"> +<tool id="clean_dante_ltr" name="DANTE_LTR retrotransposons filtering" version="0.2.2.0" python_template_version="3.5"> <requirements> - - <requirement type="package">r-optparse</requirement> - <requirement type="package">blast</requirement> - <requirement type="package">bioconductor-bsgenome</requirement> - <requirement type="package">bioconductor-biostrings</requirement> - <requirement type="package">bioconductor-rtracklayer</requirement> + <requirement type="package">dante_ltr=0.2.2.0</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ - Rscript ${__tool_directory__}/clean_ltr.R --gff3 '$dante_ltr' --reference_sequence '$reference' --output output --cpu 32 + clean_ltr.R --gff3 '$dante_ltr' --reference_sequence '$reference' --output output --cpu \${GALAXY_SLOTS:-1} && mv output_clean.gff3 $dante_ltr_clean && @@ -21,7 +16,6 @@ mv output_RM_lib_3LTR.fasta $ltr3 && mv output_summary.pdf $summary - ]]></command> <inputs> <param type="data" name="dante_ltr" format="gff3"