Mercurial > repos > petr-novak > dante_ltr

diff dante_ltr_search.xml @ 6:b91ca438a1cb draft

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"planemo upload commit 9633fb98932151f059ce02a0ce202a4374ef8d68"
author petr-novak
date Thu, 19 May 2022 08:21:55 +0000
parents 6ae4a341d1f3
children c33d6583e548
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--- a/dante_ltr_search.xml	Mon May 16 07:50:41 2022 +0000
+++ b/dante_ltr_search.xml	Thu May 19 08:21:55 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="dante_ltr_search" name="DANTE_LTR transposable element identification" version="0.1.5" python_template_version="3.5">
+<tool id="dante_ltr_search" name="DANTE_LTR retrotransposon identification" version="0.1.5" python_template_version="3.5">
     <requirements>
         <requirement type="package">blast</requirement>
         <requirement type="package">r-optparse</requirement>
@@ -13,12 +13,12 @@
         mv output.gff3 $te_ltr_gff
     ]]></command>
     <inputs>
-        <param type="data" name="dante" format="gff3" label="Filtered gff3 output from DANTE pipeline"/>
+        <param type="data" name="dante" format="gff3" label="Filtered GFF3 output from DANTE pipeline"/>
         <param type="data" name="reference" format="fasta" label="Reference sequence matching DANTE output" />
     </inputs>
     <outputs>
-        <data name="te_ltr_gff" format="gff3" label="Annotation of detected LTR transposable elements
-         based on the annotation $dante.hid and reference $reference.hid" />
+        <data name="te_ltr_gff" format="gff3" label="LTR retrotransposons annotation (GFF3)
+        based on DANTE annotation $dante.hid and reference $reference.hid" />
     </outputs>
     <help><![CDATA[
         This tool uses output from DANTE annotation pipeline to identify full length LTR