Mercurial > repos > petr-novak > dante_ltr
diff dante_ltr_search.xml @ 6:b91ca438a1cb draft
"planemo upload commit 9633fb98932151f059ce02a0ce202a4374ef8d68"
author | petr-novak |
---|---|
date | Thu, 19 May 2022 08:21:55 +0000 |
parents | 6ae4a341d1f3 |
children | c33d6583e548 |
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--- a/dante_ltr_search.xml Mon May 16 07:50:41 2022 +0000 +++ b/dante_ltr_search.xml Thu May 19 08:21:55 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="dante_ltr_search" name="DANTE_LTR transposable element identification" version="0.1.5" python_template_version="3.5"> +<tool id="dante_ltr_search" name="DANTE_LTR retrotransposon identification" version="0.1.5" python_template_version="3.5"> <requirements> <requirement type="package">blast</requirement> <requirement type="package">r-optparse</requirement> @@ -13,12 +13,12 @@ mv output.gff3 $te_ltr_gff ]]></command> <inputs> - <param type="data" name="dante" format="gff3" label="Filtered gff3 output from DANTE pipeline"/> + <param type="data" name="dante" format="gff3" label="Filtered GFF3 output from DANTE pipeline"/> <param type="data" name="reference" format="fasta" label="Reference sequence matching DANTE output" /> </inputs> <outputs> - <data name="te_ltr_gff" format="gff3" label="Annotation of detected LTR transposable elements - based on the annotation $dante.hid and reference $reference.hid" /> + <data name="te_ltr_gff" format="gff3" label="LTR retrotransposons annotation (GFF3) + based on DANTE annotation $dante.hid and reference $reference.hid" /> </outputs> <help><![CDATA[ This tool uses output from DANTE annotation pipeline to identify full length LTR