Mercurial > repos > petr-novak > long_reads_sampling
annotate long_reads_sampling.xml @ 2:ccaedca97e5e draft
planemo upload for repository https://github.com/kavonrtep/galaxy_tools commit 2b3bc2334397749509cdf6fc432d891a09763c4f-dirty
author | petr-novak |
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date | Fri, 08 Dec 2023 09:17:46 +0000 |
parents | 5596bafd2119 |
children | 9819570dc020 |
rev | line source |
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0 | 1 <tool id="long_reads_sampling" name="Create sample of long reads" version="0.1.0"> |
2 <requirements> | |
3 <requirement type="package">biopython</requirement> | |
1 | 4 <requirement type="package" version="3.6" >python</requirement> |
2
ccaedca97e5e
planemo upload for repository https://github.com/kavonrtep/galaxy_tools commit 2b3bc2334397749509cdf6fc432d891a09763c4f-dirty
petr-novak
parents:
1
diff
changeset
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5 <requirement type="literal" path="long2short.py"/> |
0 | 6 </requirements> |
7 <command detect_errors="exit_code"><![CDATA[ | |
8 python3 $__tool_directory__/long_reads_sampling.py -i "$input1" -o "$output1" -l ${total_length} -s ${seed} | |
9 ]]></command> | |
10 <inputs> | |
11 <param type="data" name="input1" format="fasta" label="input sequence in fasta format"/> | |
12 <param name="total_length" type="integer" label="Total length of sampled sequences" value="10000" /> | |
13 <param name="seed" type="integer" label="seed for setting random number generator" value="123" /> | |
14 </inputs> | |
15 <outputs> | |
16 <data name="output1" format="fasta" /> | |
17 </outputs> | |
18 <tests> | |
19 <test> | |
20 <param name="input1" value="read_10k_ALL_oxford_nanopore_sample" /> | |
21 <param name="total_length" value="1000000" /> | |
1 | 22 <param name="seed" value="123" /> |
0 | 23 <output name="output1" file="sampled.fasta"/> |
24 </test> | |
25 </tests> | |
26 <help><![CDATA[ | |
27 This tools is for random sampling of long reads te get specified total amount of data | |
28 ]]></help> | |
29 <citations> | |
30 </citations> | |
31 </tool> |