Mercurial > repos > petr-novak > long_reads_sampling
comparison long_reads_sampling.xml @ 1:5596bafd2119 draft
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| author | petr-novak |
|---|---|
| date | Tue, 12 Dec 2017 04:33:04 -0500 |
| parents | dd46956ff61f |
| children | ccaedca97e5e |
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| 0:dd46956ff61f | 1:5596bafd2119 |
|---|---|
| 1 <tool id="long_reads_sampling" name="Create sample of long reads" version="0.1.0"> | 1 <tool id="long_reads_sampling" name="Create sample of long reads" version="0.1.0"> |
| 2 <requirements> | 2 <requirements> |
| 3 <requirement type="package">biopython</requirement> | 3 <requirement type="package">biopython</requirement> |
| 4 <requirement type="package">python3</requirement> | 4 <requirement type="package" version="3.6" >python</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <command detect_errors="exit_code"><![CDATA[ | 6 <command detect_errors="exit_code"><![CDATA[ |
| 7 python3 $__tool_directory__/long_reads_sampling.py -i "$input1" -o "$output1" -l ${total_length} -s ${seed} | 7 python3 $__tool_directory__/long_reads_sampling.py -i "$input1" -o "$output1" -l ${total_length} -s ${seed} |
| 8 ]]></command> | 8 ]]></command> |
| 9 <inputs> | 9 <inputs> |
| 16 </outputs> | 16 </outputs> |
| 17 <tests> | 17 <tests> |
| 18 <test> | 18 <test> |
| 19 <param name="input1" value="read_10k_ALL_oxford_nanopore_sample" /> | 19 <param name="input1" value="read_10k_ALL_oxford_nanopore_sample" /> |
| 20 <param name="total_length" value="1000000" /> | 20 <param name="total_length" value="1000000" /> |
| 21 <param name="seed" value="1234" /> | 21 <param name="seed" value="123" /> |
| 22 <output name="output1" file="sampled.fasta"/> | 22 <output name="output1" file="sampled.fasta"/> |
| 23 </test> | 23 </test> |
| 24 </tests> | 24 </tests> |
| 25 <help><![CDATA[ | 25 <help><![CDATA[ |
| 26 This tools is for random sampling of long reads te get specified total amount of data | 26 This tools is for random sampling of long reads te get specified total amount of data |