Mercurial > repos > petr-novak > long_reads_sampling
comparison long_reads_sampling.xml @ 3:9819570dc020 draft
planemo upload for repository https://github.com/kavonrtep/galaxy_tools commit 5cc98a80e4e99f2b4089b9a8de458035304a6319
| author | petr-novak |
|---|---|
| date | Fri, 08 Dec 2023 11:24:06 +0000 |
| parents | ccaedca97e5e |
| children | 060fc04af21c |
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| 2:ccaedca97e5e | 3:9819570dc020 |
|---|---|
| 1 <tool id="long_reads_sampling" name="Create sample of long reads" version="0.1.0"> | 1 <tool id="long_reads_sampling" name="Create sample of long reads" version="0.1.1"> |
| 2 <requirements> | 2 <requirements> |
| 3 <requirement type="package">biopython</requirement> | 3 <requirement type="package">biopython</requirement> |
| 4 <requirement type="package" version="3.6" >python</requirement> | 4 <requirement type="package" version="3.6" >python</requirement> |
| 5 <requirement type="literal" path="long2short.py"/> | |
| 6 </requirements> | 5 </requirements> |
| 6 <required_files> | |
| 7 <include type="literal" path="long2short.py"/> | |
| 8 </required_files> | |
| 7 <command detect_errors="exit_code"><![CDATA[ | 9 <command detect_errors="exit_code"><![CDATA[ |
| 8 python3 $__tool_directory__/long_reads_sampling.py -i "$input1" -o "$output1" -l ${total_length} -s ${seed} | 10 python3 $__tool_directory__/long_reads_sampling.py -i "$input1" -o "$output1" -l ${total_length} -s ${seed} |
| 9 ]]></command> | 11 ]]></command> |
| 10 <inputs> | 12 <inputs> |
| 11 <param type="data" name="input1" format="fasta" label="input sequence in fasta format"/> | 13 <param type="data" name="input1" format="fasta" label="input sequence in fasta format"/> |