comparison long_reads_sampling.py @ 2:ccaedca97e5e draft

planemo upload for repository https://github.com/kavonrtep/galaxy_tools commit 2b3bc2334397749509cdf6fc432d891a09763c4f-dirty

1:5596bafd2119

                                seq_summary.number_of_sequence):
        selected_seq_id.add(seq_id)
        cummulative_length += seq_summary.id_length[seq_id]
        if cummulative_length >= args.total_length:
            break
    print(selected_seq_id)
    # to make it efficient same orger is necesary
    selected_seq_id_ordered = [i
                               for i in seq_summary.id_length
                               if i in selected_seq_id]
    curent_id = selected_seq_id_ordered.pop(0)

              file=sys.stderr)
        print("Required sequence length is larger than input data, exiting",
              file=sys.stderr)
        sys.exit(1)

    make_sequence_sample(args, seq_summary)


if __name__ == "__main__":
    main()

2:ccaedca97e5e

                                seq_summary.number_of_sequence):
        selected_seq_id.add(seq_id)
        cummulative_length += seq_summary.id_length[seq_id]
        if cummulative_length >= args.total_length:
            break
    # to make it efficient same orger is necesary
    selected_seq_id_ordered = [i
                               for i in seq_summary.id_length
                               if i in selected_seq_id]
    curent_id = selected_seq_id_ordered.pop(0)

              file=sys.stderr)
        print("Required sequence length is larger than input data, exiting",
              file=sys.stderr)
        sys.exit(1)

    print("input sequence info")
    print("total length: ", seq_summary.total_length)
    print("number of sequences: ", seq_summary.number_of_sequence)
    make_sequence_sample(args, seq_summary)


if __name__ == "__main__":
    main()