Mercurial > repos > petr-novak > long_reads_sampling
comparison long2short.xml @ 4:060fc04af21c draft default tip
planemo upload for repository https://github.com/kavonrtep/galaxy_tools commit dcff0045d0b212ebc5c4bef6a824bdbd3bb16ac3
| author | petr-novak |
|---|---|
| date | Fri, 08 Dec 2023 13:11:02 +0000 |
| parents | 9819570dc020 |
| children |
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| 3:9819570dc020 | 4:060fc04af21c |
|---|---|
| 1 <tool id="long2short" name="Get pseudo short paired end reads from long reads" version="0.1.1"> | 1 <tool id="long2short" name="Get pseudo short paired end reads from long reads" version="0.1.1"> |
| 2 <requirements> | 2 <requirements> |
| 3 <requirement type="package">biopython</requirement> | 3 <requirement type="package">biopython</requirement> |
| 4 <requirement type="package" version="3.6">python</requirement> | 4 <requirement type="package" version="3.6">python</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <required_files> | |
| 7 <include type="literal" path="long2short.py"/> | |
| 8 <include type="literal" path="long_reads_sampling.py"/> | |
| 9 </required_files> | |
| 6 <command detect_errors="exit_code"><![CDATA[ | 10 <command detect_errors="exit_code"><![CDATA[ |
| 7 python3 $__tool_directory__/long2short.py -i "$input1" -o "$output1" -cov ${coverage} -L ${insert_length} -l ${read_length} | 11 python3 $__tool_directory__/long2short.py -i "$input1" -o "$output1" -cov ${coverage} -L ${insert_length} -l ${read_length} |
| 8 ]]></command> | 12 ]]></command> |
| 9 <inputs> | 13 <inputs> |
| 10 <param type="data" name="input1" format="fasta" /> | 14 <param type="data" name="input1" format="fasta" /> |