# HG changeset patch
# User petr-novak
# Date 1702027066 0
# Node ID ccaedca97e5e1b982f5bc3fa6f28bc24df20cca5
# Parent  5596bafd21193888f1df9facd5636e36e3f70904
planemo upload for repository https://github.com/kavonrtep/galaxy_tools commit 2b3bc2334397749509cdf6fc432d891a09763c4f-dirty

diff -r 5596bafd2119 -r ccaedca97e5e __init__.py
diff -r 5596bafd2119 -r ccaedca97e5e __pycache__/long2short.cpython-34.pyc
Binary file __pycache__/long2short.cpython-34.pyc has changed
diff -r 5596bafd2119 -r ccaedca97e5e __pycache__/long2short.cpython-35.pyc
Binary file __pycache__/long2short.cpython-35.pyc has changed
diff -r 5596bafd2119 -r ccaedca97e5e __pycache__/long2short.cpython-36.pyc
Binary file __pycache__/long2short.cpython-36.pyc has changed
diff -r 5596bafd2119 -r ccaedca97e5e galaxy_integration.org
--- a/galaxy_integration.org	Tue Dec 12 04:33:04 2017 -0500
+++ b/galaxy_integration.org	Fri Dec 08 09:17:46 2023 +0000
@@ -66,3 +66,9 @@
 # it requires planemo server running!
 planemo shed_create --shed_target local
 #+END_SRC
+
+# create tarball which can be uploaded to repository manualy
+
+#+BEGIN_SRC sh
+planemo shed_build .
+#+END_SRC
diff -r 5596bafd2119 -r ccaedca97e5e long_reads_sampling.py
--- a/long_reads_sampling.py	Tue Dec 12 04:33:04 2017 -0500
+++ b/long_reads_sampling.py	Fri Dec 08 09:17:46 2023 +0000
@@ -57,7 +57,6 @@
         cummulative_length += seq_summary.id_length[seq_id]
         if cummulative_length >= args.total_length:
             break
-    print(selected_seq_id)
     # to make it efficient same orger is necesary
     selected_seq_id_ordered = [i
                                for i in seq_summary.id_length
@@ -91,6 +90,9 @@
               file=sys.stderr)
         sys.exit(1)
 
+    print("input sequence info")
+    print("total length: ", seq_summary.total_length)
+    print("number of sequences: ", seq_summary.number_of_sequence)
     make_sequence_sample(args, seq_summary)
 
 
diff -r 5596bafd2119 -r ccaedca97e5e long_reads_sampling.xml
--- a/long_reads_sampling.xml	Tue Dec 12 04:33:04 2017 -0500
+++ b/long_reads_sampling.xml	Fri Dec 08 09:17:46 2023 +0000
@@ -2,6 +2,7 @@
   <requirements>
     <requirement type="package">biopython</requirement>
     <requirement type="package" version="3.6" >python</requirement>
+    <requirement type="literal" path="long2short.py"/>
   </requirements>
   <command detect_errors="exit_code"><![CDATA[
   python3 $__tool_directory__/long_reads_sampling.py -i "$input1" -o "$output1" -l ${total_length} -s ${seed}
diff -r 5596bafd2119 -r ccaedca97e5e test