comparison tool-data/prepared_datasets.txt @ 0:a5f1638b73be draft

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#ID	Name	READS	CLS	ANNOTATION	Coverage Reference	Ref_link
PST_C	Pisum sativum Cameor (2017)	PST_C_reads_all	PST_C_hitsort.cls	PST_C_annotation	0.1038	None	None
PST_C_reduced	Pisum sativum Cameor - REDUCED (2017)	PST_C_reads_all_reduced	PST_C_hitsort_reduced.cls	PST_C_annotation	0.1038	None	None
PST	Pisum sativum Terno (Macas et al. 2015)	PST_reads_all	PST_hitsort.cls	PST_annotation	0.1038	Macas J., Novak P., Pellicer J., Cizkova J., Koblizkova A., Neumann P., Fukova I., Dolezel J., Kelly L., Leitch I. (2015) - In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae PLoS ONE 10 (11): e0143424.	http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0143424
CEUR	Cuscuta europea (2018)	CEUR_reads_all	CEUR_hitsort.cls	CEUR_annotation	0.1837	None	None 
CEUR_reduced	Cuscuta europea - REDUCED (2018)	CEUR_reads_all_reduced	CEUR_hitsort_reduced.cls	CEUR_annotation	0.1837	None	None 
GEPY	Genlisea nigrocaulis (Vu et al. 2015)	GEPY_reads_all	GEPY_hitsort_PID90_LCOV55.cls	GEPY_annotation	1	Vu, G.T.H., Schmutzer, T., Bull, F., Cao, H.X., Fuchs, J., Tran, T.D., Jovtchev, G., Pistrick, K., Stein, K., Pecinka, A., Neumann, P., Novak, P., Macas, J., Dear, P.H., Blattner, F.R., Scholz, U., Schubert, I. (2015) - Comparative genome analysis reveals divergent genome size evolution in a carnivorous plant genus. Plant Genome 8(3).	https://dl.sciencesocieties.org/publications/tpg/abstracts/8/3/plantgenome2015.04.0021
RHP	Rhynchospora pubera (Marques at al. 2015)	RHP_reads_all	RHP_hitsort_PID90_LCOV55.cls	RHP_annotation	0.5467	Marques, A., Ribeiro, T., Neumann, P., Macas, J., Novak, P., Schubert, V., Pellino, M., Fuchs, J., Ma, W., Kuhlmann, M., Brandt, R., Vanzela, A.L.L., Beseda, T., Simkova, H., Pedrosa-Harand, A., Houben, A. (2015) - Holocentromeres in Rhynchospora are associated with genome-wide centromere-specific repeat arrays interspersed amongst euchromatin. Proc. Natl. Acad. Sci. USA 112: 13633-13638.	http://w3lamc.umbr.cas.cz/lamc/publ/Marques_PNAS_2015.pdf
BVL	Beta vulgaris (Kowar et al. 2016)	BVL_reads_all	BVL_hitsort_PID90_LCOV55.cls	BVL_annotation	0.1817	Kowar, T., Zakrzewski, F., Macas, J., Koblizkova, A., Viehoever, P., Weisshaar, B., Schmidt, T. (2016) - Repeat composition of CenH3-chromatin and H3K9me2-marked heterochromatin in sugar beet (Beta vulgaris). BMC Plant Biol. 16: 120.	http://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-016-0805-5