annotate fasta_manual_input.xml @ 7:89c5ba120b21 draft

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author petr-novak
date Mon, 02 Dec 2019 08:41:43 -0500
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1 <tool id="fasta_input" name="Fasta interactive input" version="1.0.0">
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2 <description> Enter fasta file to text window </description>
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3 <command>
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4 echo "${fasta_text}" > ${fasta_file} &amp;&amp;
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5 sed -i 's/__gt__/>/g' ${fasta_file} &amp;&amp;
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6 sed -i 's/__cn__/\n/g' ${fasta_file}
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7 </command>
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8
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9 <inputs>
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10 <param type="text" name="fasta_text" area="True" size="50x150" label="Paste sequences in fasta format" />
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11 </inputs>
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12
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14 <outputs>
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15 <data format="fasta" name="fasta_file" label="fasta sequence manually edited" />
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16 </outputs>
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17
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18 <help>
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19 This is helper tool to enter fasta sequences manualy
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20 </help>
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21 </tool>