comparison RM_custom_search.py @ 11:16150c85fb3a draft

Uploaded

10:768883847008

    try:
        z=zipfile.ZipFile(f)
        # extract only dirCLXXXX/reads.fas
        seq_list = []
        for filein in z.namelist():
            if filein.lower().startswith("seqclust/clustering/clusters/dir_cl") and filein.endswith("reads.fas"):
                outdir = filein.split("/")[3]
                outfile = outdir +"/reads.fas"
                source = z.open(filein)
                os.mkdir(outdir)
                target = open(outfile, "wb")

11:16150c85fb3a

    try:
        z=zipfile.ZipFile(f)
        # extract only dirCLXXXX/reads.fas
        seq_list = []
        for filein in z.namelist():
            c1 = filein.lower().startswith("seqclust/clustering/clusters/dir_cl")
            c2 = filein.endswith("reads.fas")
            c3 = filein.endswith("reads.fasta")  # in newer RE2 versions
            if c1 and (c2 or c3):
                outdir = filein.split("/")[3]
                outfile = outdir +"/reads.fas"
                source = z.open(filein)
                os.mkdir(outdir)
                target = open(outfile, "wb")