Mercurial > repos > petr-novak > re_utils

comparison extract_contigs_from_archive.xml @ 23:36c418bca8b2 draft

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planemo upload commit 20bdf879b52796d3fb251a20807191ff02084d3c-dirty
author petr-novak
date Wed, 02 Aug 2023 11:50:25 +0000
parents c2c69c6090f0
children b50db133106a
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22:58807b35777a 23:36c418bca8b2
1 <tool id="extract_contigs" name="Extract contigs from RepeatExplorer2 archive"> 1 <tool id="extract_contigs" name="Extract contigs from RepeatExplorer2 archive" version="1.0.0.3">
2 <command detect_errors="exit_code"> 2 <command detect_errors="exit_code">
3 unzip -p ${RepeatExplorer_archive} contigs.fasta &gt; ${contigs} 3 unzip -p ${RepeatExplorer_archive} contigs.fasta &gt; ${contigs}
4 &amp;&amp; 4 &amp;&amp;
5 unzip -p -j ${RepeatExplorer_archive} "*.aln" &gt; ${aln} 5 unzip -p -j ${RepeatExplorer_archive} "*.aln" &gt; ${aln}
6 </command> 6 </command>