comparison ChipSeqRatioDef.xml @ 7:89c5ba120b21 draft

Uploaded

6:f224513123a1

	       help="Contigs obtained from RepeatExplorer clustering pipeline in fasta file"/> 
	<param name="MaxCl" label="Number of clusters to be shown in graph" type="integer" value="200"/>   
	<param name="bitscore" label="Minimum bit score threshold" type="integer" value="50" help="All similarity hits with lower bit score will not be considered for ChIP/Input ratio calculation"/>   
    </inputs>
    <outputs>
    	<data name="OutputFile" format="tabular"/>
	<data name="ReportFile" format="html"/> 
    </outputs>

    <help>
**What it does**

7:89c5ba120b21

	       help="Contigs obtained from RepeatExplorer clustering pipeline in fasta file"/> 
	<param name="MaxCl" label="Number of clusters to be shown in graph" type="integer" value="200"/>   
	<param name="bitscore" label="Minimum bit score threshold" type="integer" value="50" help="All similarity hits with lower bit score will not be considered for ChIP/Input ratio calculation"/>   
    </inputs>
    <outputs>
    	<data name="OutputFile" format="tabular"
            label="csv table from ChIP-Seq-Mapper on datasets ${InputFile.hid} (Input) ${ChipFile.hid} (ChIP) and ${ContigFile.hid} (reference)"/>

	    <data name="ReportFile" format="html"
            label="HTML report from ChIP-Seq-Mapper on datasets ${InputFile.hid} (Input) ${ChipFile.hid} (ChIP) and ${ContigFile.hid} (reference)"/> 
    </outputs>

    <help>
**What it does**