Mercurial > repos > petr-novak > re_utils

comparison extract_contigs_from_archive.xml @ 26:93595f42a04d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 20bdf879b52796d3fb251a20807191ff02084d3c-dirty
author petr-novak
date Wed, 02 Aug 2023 12:45:16 +0000
parents 5dba804e6884
children 91996b991991
comparison
equal deleted inserted replaced
25:5dba804e6884 26:93595f42a04d
2 <command detect_errors="exit_code"> 2 <command detect_errors="exit_code">
3 <![CDATA[ 3 <![CDATA[
4 unzip -p ${RepeatExplorer_archive} contigs.fasta > ${contigs} 4 unzip -p ${RepeatExplorer_archive} contigs.fasta > ${contigs}
5 && 5 &&
6 mkdir -p tempdir 6 mkdir -p tempdir
7 &&
7 unzip ${RepeatExplorer_archive} "*.aln" -d tempdir 8 unzip ${RepeatExplorer_archive} "*.aln" -d tempdir
8 && 9 &&
9 find tempdir -type f -name "*.aln" -exec cat {} + > ${aln} 10 find tempdir -type f -name "*.aln" -exec cat {} + > ${aln}
10 && 11 &&
11 rm -r tempdir 12 rm -r tempdir