Mercurial > repos > petr-novak > re_utils
comparison RM_custom_search.xml @ 9:c2c69c6090f0 draft
Uploaded
| author | petr-novak |
|---|---|
| date | Fri, 31 Jan 2020 06:55:23 -0500 |
| parents | a4cd8608ef6b |
| children | 16150c85fb3a |
comparison
equal
deleted
inserted
replaced
| 8:99569eccc583 | 9:c2c69c6090f0 |
|---|---|
| 8 <command interpreter="python3"> | 8 <command interpreter="python3"> |
| 9 RM_custom_search.py -i $input_zip -d $RMdatabase -g $__root_dir__ -r $output_html | 9 RM_custom_search.py -i $input_zip -d $RMdatabase -g $__root_dir__ -r $output_html |
| 10 </command> | 10 </command> |
| 11 | 11 |
| 12 <inputs> | 12 <inputs> |
| 13 <param format="zip" type="data" name="input_zip" label="Input clustering data in as zip archive" help="zip archive obtained from previouse Graph-based sequence clustering"/> | 13 <param format="zip" type="data" name="input_zip" label="RepeatExplorer output data archive" help="Zip archive obtained from previouse Graph-based sequence clustering"/> |
| 14 <param name="RMdatabase" format="fasta" type="data" label="Library of repeats" help="Library of repeats as DNA sequences in fasta format. The recommended format for IDs in a custom library is : '>reapeatname#class/subclass'"/> | 14 <param name="RMdatabase" format="fasta" type="data" label="Library of repeats" help="Library of repeats as DNA sequences in fasta format. The recommended format for IDs in a custom library is : '>reapeatname#class/subclass'"/> |
| 15 </inputs> | 15 </inputs> |
| 16 | 16 |
| 17 <outputs> | 17 <outputs> |
| 18 <data format="html" name="output_html" label="HTML summary of custom database ${RMdatabase.hid} search on dataset ${input_zip.hid} " /> | 18 <data format="html" name="output_html" label="HTML summary of custom database ${RMdatabase.hid} search on dataset ${input_zip.hid} " /> |