comparison fastq_name_affixer.xml @ 9:c2c69c6090f0 draft

Uploaded

8:99569eccc583

<command interpreter="python">
${__tool_directory__}/name_affixer.py -f $input -p "$prefix" -s "$suffix" -n $nspace > $output
</command>

 <inputs>
  <param format="fastq" type="data" name="input" label="Choose your fastq file" />
  <param name="prefix" type="text" size="10" value="" label="Prefix" help="Enter prefix which will be added to all sequences names" />
  <param name="suffix" type="text" size="10" value="" label="Suffix" help="Enter suffix which will be added to all sequences names"/>
  <param name="nspace" type="integer" size="10" value="0" min="0" max="1000" label="Number of spaces in name to ignore" help="Sequence name is a string before the first space. If you want name to include spaces in name, enter positive integer. All other characters beyond ignored spaces are omitted"/>
 </inputs>


 <outputs>
 	<data format="fastq" name="output" label="fastq dataset ${input.hid} with modified sequence names" />
 </outputs>

 <help>
**What is does**
 

9:c2c69c6090f0

<command interpreter="python">
${__tool_directory__}/name_affixer.py -f $input -p "$prefix" -s "$suffix" -n $nspace > $output
</command>

 <inputs>
  <param format="fastq" type="data" name="input" label="Choose your FASTQ file" />
  <param name="prefix" type="text" size="10" value="" label="Prefix" help="Enter prefix which will be added to all sequences names" />
  <param name="suffix" type="text" size="10" value="" label="Suffix" help="Enter suffix which will be added to all sequences names"/>
  <param name="nspace" type="integer" size="10" value="0" min="0" max="1000" label="Number of spaces in sequence name to ignore" help="Sequence name is a string before the first space. If you want name to include spaces in name, enter positive integer. All other characters beyond ignored spaces are omitted"/>
 </inputs>


 <outputs>
 	<data format="fastq" name="output" label="FASTQ dataset ${input.hid} with modified sequence names" />
 </outputs>

 <help>
**What is does**