Mercurial > repos > petr-novak > re_utils
comparison RM_custom_search.xml @ 13:f12eb3896842 draft
Uploaded
| author | petr-novak |
|---|---|
| date | Fri, 07 Feb 2020 02:25:47 -0500 |
| parents | 6b7d31026d1c |
| children | 62fefa284036 |
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| 12:6b7d31026d1c | 13:f12eb3896842 |
|---|---|
| 1 <tool id="RMsearch" name="RepeatMasker custom search" version="1.0.3"> | 1 <tool id="RMsearch" name="RepeatMasker custom search" version="1.0.3"> |
| 2 | 2 |
| 3 <description>Scan clustering results using RepeatMasker against custom database of repeats</description> | 3 <description>Scan clustering results using RepeatMasker against custom database of repeats</description> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="4.0.7" >repeatmasker</requirement> | 5 <requirement type="package" version="4.0.7">repeatmasker</requirement> |
| 6 <requirement type="package">r-r2html</requirement> | 6 <requirement type="package">r-r2html</requirement> |
| 7 <requirement type="package">r-getopt</requirement> | 7 <requirement type="package">r-getopt</requirement> |
| 8 <requirement type="package">bioconductor-biostrings</requirement> | |
| 8 </requirements> | 9 </requirements> |
| 9 | 10 |
| 10 <command interpreter="python3"> | 11 <command interpreter="python3"> |
| 11 RM_custom_search.py -i $input_zip -d $RMdatabase -g $__root_dir__ -r $output_html | 12 RM_custom_search.py -i $input_zip -d $RMdatabase -g $__root_dir__ -r $output_html |
| 12 </command> | 13 </command> |