Mercurial > repos > petr-novak > re_utils
comparison pairScan.xml @ 21:f4ed6a65a2ff draft
Uploaded
| author | petr-novak |
|---|---|
| date | Thu, 27 Jul 2023 09:46:13 +0000 |
| parents | c2c69c6090f0 |
| children | 58807b35777a |
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| 20:5a05925340b0 | 21:f4ed6a65a2ff |
|---|---|
| 1 | 1 |
| 2 <tool id="pairScan" name="Scan paired-end reads for overlap" version="1.0.0"> | 2 <tool id="pairScan" name="Scan paired-end reads for overlap" version="1.0.0.1"> |
| 3 <description> Scan paired-end reads for overlap </description> | 3 <description> Scan paired-end reads for overlap </description> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package">python-levenshtein</requirement> | 5 <requirement type="package">python-levenshtein</requirement> |
| 6 </requirements> | 6 </requirements> |
| 7 <required_files> | |
| 8 <include type="literal" path="pairScan.py"/> | |
| 9 </required_files> | |
| 10 | |
| 7 <command interpreter="python"> | 11 <command interpreter="python"> |
| 8 pairScan.py -f $fasta_input -o $min_overlap -m $max_mismatch -p $pass -b $bad -s $offset | 12 pairScan.py -f $fasta_input -o $min_overlap -m $max_mismatch -p $pass -b $bad -s $offset |
| 9 </command> | 13 </command> |
| 10 | 14 |
| 11 <inputs> | 15 <inputs> |