diff summarize_cluster_table.xml @ 19:2f1b5d5c5dd5 draft

Uploaded

--- a/summarize_cluster_table.xml	Fri May 14 11:08:46 2021 +0000
+++ b/summarize_cluster_table.xml	Tue May 18 11:03:57 2021 +0000
@@ -1,5 +1,5 @@
-<tool id="summarize_annotation" name="Make summary of CLUSTER_TABLE" version="1.0.0">
-  <description> Simple utility to summarize final annotation from RepeatExplorer CLUSTER_TABLE</description>
+<tool id="summarize_annotation" name="Repeat proportions from CLUSTER_TABLE" version="1.0.0">
+  <description> Simple utility to summarize final annotations from RepeatExplorer CLUSTER_TABLE</description>
   <requirements>
     <requirement type="package">r-optparse</requirement>
   </requirements>
@@ -16,12 +16,12 @@
     </inputs>
 
     <outputs>
-         	<data format="tabular" name="output" label="Summary of repeat proportion from ${cluster_table.hid}"/>
+         	<data format="tabular" name="output" label="Summary of repeat proportions from ${cluster_table.hid}"/>
     </outputs>
     <help>
-      **Summarization of annotation from CLUSTER_TABLE**
+      **The tool calculates genome proportions of identified repeats based on cluster annotations in CLUSTER_TABLE.csv**
           
-      Input file CLUSTER_TABLE.csv  must contains filled "Final_annotation" column. Contamination and organelle clusters are discarded from quantification, cluster table must also contain header - see example.
+	  The column "Final_annotation" must be filled in the input file CLUSTER_TABLE.csv. Contamination and organelle clusters are discarded from quantification. Table header with information about numbers of analyzed reads should remain unchanged - see example below.
 
       Example of CLUSTER_TABLE.csv: ::