diff test_run1.sh @ 5:378565f5a875 draft

Uploaded

--- a/test_run1.sh	Wed Sep 18 06:30:04 2019 -0400
+++ b/test_run1.sh	Fri Nov 22 07:56:48 2019 -0500
@@ -9,7 +9,17 @@
 ./single_fastq_filtering_wrapper.sh -a test_data/ERR215189_1_part.fastq.gz -o tmp/test1.fasta -G tmp/test1.png -c 10 -N 0
 
 echo "single fastq filtering with with sampling"
-./single_fastq_filtering_wrapper.sh -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2.fasta -G tmp/test2.png -c 10 -N 0 -n 500
+./single_fastq_filtering_wrapper.sh -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2a.fasta -G tmp/test2a.png -c 10 -N 0 -n 500
+
+echo "single fastq filtering with with sampling"
+./single_fastq_filtering_wrapper.sh -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2b.fasta -G tmp/test2b.png -c 10 -N 0 -n 647
+
+echo "single fastq filtering with with sampling"
+./single_fastq_filtering_wrapper.sh -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2c.fasta -G tmp/test2c.png -c 10 -N 0 -n 839
+
+echo "single fastq filtering with with sampling"
+./single_fastq_filtering_wrapper.sh -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2d.fasta -G tmp/test2d.png -c 10 -N 0 -n 911
+
 
 echo "single fastq filtering with contaminant removing"
 ./single_fastq_filtering_wrapper.sh -F tool_data/organele_ref_and_phi-X174.fasta -a test_data/ERR215189_1_part.fastq.gz -o tmp/test3.fasta -G tmp/test3.png -c 10 -N 0