diff test_run2.sh @ 5:378565f5a875 draft

Uploaded

--- a/test_run2.sh	Wed Sep 18 06:30:04 2019 -0400
+++ b/test_run2.sh	Fri Nov 22 07:56:48 2019 -0500
@@ -6,7 +6,16 @@
 ./paired_fastq_filtering_wrapper.sh -b test_data/ERR215189_2_part.fastq.gz -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2.1.fasta -G tmp/test2.1.png -c 10 -N 0
 
 echo "paired fastq filtering with with sampling"
-./paired_fastq_filtering_wrapper.sh -b test_data/ERR215189_2_part.fastq.gz -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2.2.fasta -G tmp/test2.2.png -c 10 -N 0 -n 500
+./paired_fastq_filtering_wrapper.sh -b test_data/ERR215189_2_part.fastq.gz -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2.a2.fasta -G tmp/test2.2.png -c 10 -N 0 -n 500
+
+echo "paired fastq filtering with with sampling"
+./paired_fastq_filtering_wrapper.sh -b test_data/ERR215189_2_part.fastq.gz -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2.a3.fasta -G tmp/test2.2.png -c 10 -N 0 -n 653
+
+echo "paired fastq filtering with with sampling"
+./paired_fastq_filtering_wrapper.sh -b test_data/ERR215189_2_part.fastq.gz -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2.a4.fasta -G tmp/test2.2.png -c 10 -N 0 -n 547
+
+echo "paired fastq filtering with with sampling"
+./paired_fastq_filtering_wrapper.sh -b test_data/ERR215189_2_part.fastq.gz -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2.a5.fasta -G tmp/test2.2.png -c 10 -N 0 -n 839
 
 echo "paired fastq filtering with contaminant removing"
 ./paired_fastq_filtering_wrapper.sh -F tool_data/organele_ref_and_phi-X174.fasta -b test_data/ERR215189_2_part.fastq.gz -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2.3.fasta -G tmp/test2.3.png -c 10 -N 0