Mercurial > repos > petr-novak > re_utils
diff pairScan.xml @ 22:58807b35777a draft
planemo upload commit 20bdf879b52796d3fb251a20807191ff02084d3c-dirty
| author | petr-novak |
|---|---|
| date | Wed, 02 Aug 2023 11:31:12 +0000 |
| parents | f4ed6a65a2ff |
| children | cab41d23e2a3 |
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--- a/pairScan.xml Thu Jul 27 09:46:13 2023 +0000 +++ b/pairScan.xml Wed Aug 02 11:31:12 2023 +0000 @@ -1,5 +1,5 @@ -<tool id="pairScan" name="Scan paired-end reads for overlap" version="1.0.0.1"> +<tool id="pairScan" name="Scan paired-end reads for overlap" version="1.0.0.3"> <description> Scan paired-end reads for overlap </description> <requirements> <requirement type="package">python-levenshtein</requirement> @@ -8,8 +8,8 @@ <include type="literal" path="pairScan.py"/> </required_files> - <command interpreter="python"> - pairScan.py -f $fasta_input -o $min_overlap -m $max_mismatch -p $pass -b $bad -s $offset + <command> + python '$__tool_directory__'/pairScan.py -f $fasta_input -o $min_overlap -m $max_mismatch -p $pass -b $bad -s $offset </command> <inputs>