diff fasta_manual_input.xml @ 0:a4cd8608ef6b draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fasta_manual_input.xml	Mon Apr 01 07:56:36 2019 -0400
@@ -0,0 +1,21 @@
+<tool id="fasta_input" name="Fasta interactive input" version="1.0.0">
+  <description> Enter fasta file to text window </description>
+  <command>
+    echo "${fasta_text}" > ${fasta_file}  &amp;&amp;
+    sed -i 's/__gt__/>/g' ${fasta_file}  &amp;&amp;
+    sed -i 's/__cn__/\n/g' ${fasta_file}
+  </command>
+
+  <inputs>
+    <param  type="text" name="fasta_text" area="True" size="50x150" label="Paste sequences in fasta format" />
+  </inputs>
+
+
+  <outputs>
+    <data format="fasta" name="fasta_file" label="fasta sequence manually edited" />
+  </outputs>
+
+  <help>
+    This is helper tool to enter fasta sequences manualy
+  </help>
+</tool>