diff test_run1.sh @ 0:a4cd8608ef6b draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test_run1.sh	Mon Apr 01 07:56:36 2019 -0400
@@ -0,0 +1,17 @@
+#!/bin/sh
+
+# same like galaxy test:
+
+./single_fastq_filtering_wrapper.sh -a test_data/ERR215189_1_part.fastq.gz -o test_data/single_output.fasta -G test_data/single_output.png -c 10 -N 0 -p 95
+
+
+echo "single fastq filtering with defaults"
+./single_fastq_filtering_wrapper.sh -a test_data/ERR215189_1_part.fastq.gz -o tmp/test1.fasta -G tmp/test1.png -c 10 -N 0
+
+echo "single fastq filtering with with sampling"
+./single_fastq_filtering_wrapper.sh -a test_data/ERR215189_1_part.fastq.gz -o tmp/test2.fasta -G tmp/test2.png -c 10 -N 0 -n 500
+
+echo "single fastq filtering with contaminant removing"
+./single_fastq_filtering_wrapper.sh -F tool_data/organele_ref_and_phi-X174.fasta -a test_data/ERR215189_1_part.fastq.gz -o tmp/test3.fasta -G tmp/test3.png -c 10 -N 0 
+
+