Mercurial > repos > petr-novak > re_utils
diff pairScan.xml @ 9:c2c69c6090f0 draft
Uploaded
| author | petr-novak |
|---|---|
| date | Fri, 31 Jan 2020 06:55:23 -0500 |
| parents | e320ef2d105a |
| children | f4ed6a65a2ff |
line wrap: on
line diff
--- a/pairScan.xml Mon Dec 09 04:14:48 2019 -0500 +++ b/pairScan.xml Fri Jan 31 06:55:23 2020 -0500 @@ -1,6 +1,6 @@ -<tool id="pairScan" name="Scan paired reads for overlap" version="1.0.0"> - <description> Scan paired reads for overlap </description> +<tool id="pairScan" name="Scan paired-end reads for overlap" version="1.0.0"> + <description> Scan paired-end reads for overlap </description> <requirements> <requirement type="package">python-levenshtein</requirement> </requirements> @@ -9,8 +9,8 @@ </command> <inputs> - <param format="fasta" type="data" name="fasta_input" label="sequences in fasta format" /> - <param name="min_overlap" type="integer" size="3" value="30" min="20" max="100" label="minimum overlap length [nt] " /> + <param format="fasta" type="data" name="fasta_input" label="Reads in FASTA format" /> + <param name="min_overlap" type="integer" size="3" value="30" min="20" max="100" label="Minimum overlap length [nt] " /> <param name="max_mismatch" type="select" label="Maximum number of mismatches per 100 bp"> <option value="0">0</option> <option value="1" selected="true">1</option> @@ -38,8 +38,8 @@ <outputs> - <data format="fasta" name="pass" label="pairs with no overlap from dataset ${fasta_input.hid}"/> - <data format="fasta" name="bad" label="overlaping pairs from dataset ${fasta_input.hid}"/> + <data format="fasta" name="pass" label="Pairs with no overlap from dataset ${fasta_input.hid}"/> + <data format="fasta" name="bad" label="Overlaping pairs from dataset ${fasta_input.hid}"/> </outputs> <help>