diff renameSequences.xml @ 9:c2c69c6090f0 draft

Uploaded

--- a/renameSequences.xml	Mon Dec 09 04:14:48 2019 -0500
+++ b/renameSequences.xml	Fri Jan 31 06:55:23 2020 -0500
@@ -5,21 +5,21 @@
 </command>
 
  <inputs>
-  <param format="fasta" type="data" name="input" label="Choose your fasta file" />
-  <param name="prefix_length" type="integer" size="10" value="0" label="Prefix length" help="Enter length of prefix to keep in sequences names" />
-  <param name="paired" type="boolean" truevalue="true" falsevalue="false" checked="False" label="All sequence reads are paired" help="check if you are using pair reads and input sequences contain both read mates and  left mates alternate with their right mates"/>
+  <param format="fasta" type="data" name="input" label="Choose your FASTA file" />
+  <param name="prefix_length" type="integer" size="10" value="0" label="Prefix length" help="Enter the length of prefix to keep in sequences names" />
+  <param name="paired" type="boolean" truevalue="true" falsevalue="false" checked="False" label="Sequences are paired-end reads in interlaced format" help=""/>
  </inputs>
 
 
  <outputs>
- 	<data format="fasta" name="output" label="renamed sequences from dataset ${input.hid}" />
+ 	<data format="fasta" name="output" label="Renamed sequences from dataset ${input.hid}" />
  </outputs>
 
  <help>
 **What is does**
  
 Use this tool to rename your sequences with numerical counter while keeping sequence name prefex as part of the name. 
-If paired sequences are used, last character in sequence name is used to distinguish pairs.  
+If paired-end reads are used, the last character in sequence name is used to distinguish pairs.  
  
 </help>
 </tool>