Mercurial > repos > petr-novak > re_utils

diff paired_fastq_filtering.xml @ 33:f1738f8649b0 draft

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planemo upload commit 39094a128ea3dd2c39f4997c6de739c33c07e5f3-dirty
author petr-novak
date Fri, 04 Aug 2023 08:09:40 +0000
parents 36c418bca8b2
children
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line diff
--- a/paired_fastq_filtering.xml	Fri Aug 04 07:37:49 2023 +0000
+++ b/paired_fastq_filtering.xml	Fri Aug 04 08:09:40 2023 +0000
@@ -9,7 +9,7 @@
     </description>
     <requirements>
         <requirement type="package">blast</requirement>
-        <requirement type="package">cutadapt</requirement>
+        <requirement type="package" version="4.4">cutadapt</requirement>
         <requirement type="package">bioconductor-shortread</requirement>
         <requirement type="package">r-optparse</requirement>
     </requirements>
@@ -19,6 +19,7 @@
         <include type="literal" path="fasta_interlacer.py"/>
     </required_files>
     <command>
+        cutadapt --version;
         bash '$__tool_directory__'/paired_fastq_filtering_wrapper.sh -a ${A} -b ${B} -o
         ${paired} -c ${cut_off} -p ${percent_above} -N ${max_n} $rename -G ${png_output}