Mercurial > repos > petr-novak > re_utils

diff single_fastq_filtering.R @ 33:f1738f8649b0 draft

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planemo upload commit 39094a128ea3dd2c39f4997c6de739c33c07e5f3-dirty
author petr-novak
date Fri, 04 Aug 2023 08:09:40 +0000
parents 378565f5a875
children
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line diff
--- a/single_fastq_filtering.R	Fri Aug 04 07:37:49 2023 +0000
+++ b/single_fastq_filtering.R	Fri Aug 04 08:09:40 2023 +0000
@@ -143,8 +143,7 @@
 
 
 cutadapt_cmd=function(input,output,cutadapt_arguments){
-	cmds=paste("cutadapt --format=",
-			"fastq",
+	cmds=paste("cutadapt ",
 			cutadapt_arguments,
 			" ",
 			c(input),