Mercurial > repos > petr-novak > re_utils

diff ChipSeqRatioDef.xml @ 6:f224513123a1 draft

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Uploaded
author petr-novak
date Mon, 02 Dec 2019 03:45:28 -0500
parents e320ef2d105a
children 89c5ba120b21
line wrap: on
line diff
--- a/ChipSeqRatioDef.xml	Fri Nov 22 07:56:48 2019 -0500
+++ b/ChipSeqRatioDef.xml	Mon Dec 02 03:45:28 2019 -0500
@@ -7,6 +7,7 @@
       <requirement type="package">r-base64enc</requirement>
       <requirement type="package">r-r2html</requirement>
       <requirement type="package">blast</requirement>
+      <!-- <requirement type="package">chip_seq_ration</requirement> -->
     </requirements>
     <command interpreter="python3">
 	ChipSeqRatioAnalysis.py 
@@ -26,7 +27,7 @@
 	<param name="ContigFile" label="Reference - Contig Sequences" type="data" format="fasta"
 	       help="Contigs obtained from RepeatExplorer clustering pipeline in fasta file"/> 
 	<param name="MaxCl" label="Number of clusters to be shown in graph" type="integer" value="200"/>   
-	<param name="bitscore" label="Minimum bit score threshold" type="integer" value="30" help="All similarity hits with lower bit score will not be considered for ChIP/Input ratio calculation"/>   
+	<param name="bitscore" label="Minimum bit score threshold" type="integer" value="50" help="All similarity hits with lower bit score will not be considered for ChIP/Input ratio calculation"/>   
     </inputs>
     <outputs>
     	<data name="OutputFile" format="tabular"/>