# HG changeset patch
# User petr-novak
# Date 1580819972 18000
# Node ID 16150c85fb3afb91239f1325d630890ed5ef8d14
# Parent  7688838470082d1ad930a8cf74fbb555364ef4e9
Uploaded

diff -r 768883847008 -r 16150c85fb3a RM_custom_search.py
--- a/RM_custom_search.py	Mon Feb 03 06:44:58 2020 -0500
+++ b/RM_custom_search.py	Tue Feb 04 07:39:32 2020 -0500
@@ -19,7 +19,10 @@
         # extract only dirCLXXXX/reads.fas
         seq_list = []
         for filein in z.namelist():
-            if filein.lower().startswith("seqclust/clustering/clusters/dir_cl") and filein.endswith("reads.fas"):
+            c1 = filein.lower().startswith("seqclust/clustering/clusters/dir_cl")
+            c2 = filein.endswith("reads.fas")
+            c3 = filein.endswith("reads.fasta")  # in newer RE2 versions
+            if c1 and (c2 or c3):
                 outdir = filein.split("/")[3]
                 outfile = outdir +"/reads.fas"
                 source = z.open(filein)
diff -r 768883847008 -r 16150c85fb3a RM_custom_search.xml
--- a/RM_custom_search.xml	Mon Feb 03 06:44:58 2020 -0500
+++ b/RM_custom_search.xml	Tue Feb 04 07:39:32 2020 -0500
@@ -1,4 +1,4 @@
-<tool id="RMsearch" name="RepeatMasker custom search" version="1.0.1">
+<tool id="RMsearch" name="RepeatMasker custom search" version="1.0.2">
 
   <description>Scan clustering results using RepeatMasker against custom database of repeats</description>
   <requirements>