# HG changeset patch
# User petr-novak
# Date 1690977025 0
# Node ID 36c418bca8b27ad3037c244c885dcc8c5ad4f5c2
# Parent  58807b35777ac1e43047b31c03847ef31e347f2c
planemo upload commit 20bdf879b52796d3fb251a20807191ff02084d3c-dirty

diff -r 58807b35777a -r 36c418bca8b2 ChipSeqRatioDef.xml
--- a/ChipSeqRatioDef.xml	Wed Aug 02 11:31:12 2023 +0000
+++ b/ChipSeqRatioDef.xml	Wed Aug 02 11:50:25 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="chip_seq_ratio_1" name="ChIP-Seq Mapper" version="0.1.1.3">
+<tool id="chip_seq_ratio_1" name="ChIP-Seq Mapper" version="1.1.1.3">
   <stdio>
     <exit_code range="1:" level="fatal" description="Error"/>
   </stdio>
diff -r 58807b35777a -r 36c418bca8b2 extract_contigs_from_archive.xml
--- a/extract_contigs_from_archive.xml	Wed Aug 02 11:31:12 2023 +0000
+++ b/extract_contigs_from_archive.xml	Wed Aug 02 11:50:25 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="extract_contigs" name="Extract contigs from RepeatExplorer2 archive">
+<tool id="extract_contigs" name="Extract contigs from RepeatExplorer2 archive" version="1.0.0.3">
   <command detect_errors="exit_code">
     unzip -p ${RepeatExplorer_archive} contigs.fasta  &gt; ${contigs}
     &amp;&amp;
diff -r 58807b35777a -r 36c418bca8b2 extract_files_from_re_archive.xml
--- a/extract_files_from_re_archive.xml	Wed Aug 02 11:31:12 2023 +0000
+++ b/extract_files_from_re_archive.xml	Wed Aug 02 11:50:25 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="extract_var_files_from_re" name="Extract various files from RepeatExplorer2 archive">
+<tool id="extract_var_files_from_re" name="Extract various files from RepeatExplorer2 archive" version="1.0.0.3">
   <command detect_errors="exit_code">
 
     #for $sf in $file:
diff -r 58807b35777a -r 36c418bca8b2 fastq_name_affixer.xml
--- a/fastq_name_affixer.xml	Wed Aug 02 11:31:12 2023 +0000
+++ b/fastq_name_affixer.xml	Wed Aug 02 11:50:25 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="names_affixer" name="FASTQ Read name affixer" version="1.0.0">
+<tool id="names_affixer" name="FASTQ Read name affixer" version="1.0.0.3">
     <description>Tool appending suffix and prefix to sequences names</description>
     <required_files>
         <include type="literal" path="name_affixer.py"/>
diff -r 58807b35777a -r 36c418bca8b2 paired_fastq_filtering.xml
--- a/paired_fastq_filtering.xml	Wed Aug 02 11:31:12 2023 +0000
+++ b/paired_fastq_filtering.xml	Wed Aug 02 11:50:25 2023 +0000
@@ -1,6 +1,6 @@
-<tool id="paired_fastq_filtering" name="Preprocessing of FASTQ paired-end reads">
+<tool id="paired_fastq_filtering" name="Preprocessing of FASTQ paired-end reads" version="1.0.0.3">
     <stdio>
-        <exit_code range="1:" level="fatal" description="Error" version="1.0.0.3"/>
+        <exit_code range="1:" level="fatal" description="Error"/>
     </stdio>
     <description>
         Preprocessing of paired-end reads in FASTQ format