# HG changeset patch
# User petr-novak
# Date 1580730298 18000
# Node ID 7688838470082d1ad930a8cf74fbb555364ef4e9
# Parent  c2c69c6090f06bfcb56d4d835ba5a09801249646
Uploaded

diff -r c2c69c6090f0 -r 768883847008 paired_fastq_filtering.xml
--- a/paired_fastq_filtering.xml	Fri Jan 31 06:55:23 2020 -0500
+++ b/paired_fastq_filtering.xml	Mon Feb 03 06:44:58 2020 -0500
@@ -49,9 +49,9 @@
       </when>
     </conditional>
 
-    <param type="integer" name="cut_off" label="Quality cut-off" value="10" min="0" help="See below how to correctly set the quality cut-off" />
+    <param type="integer" name="cut_off" label="Quality cutoff" value="10" min="0" help="See below how to correctly set the quality cutoff" />
     <param type="integer" name="percent_above" label="Percent above cutoff" value="95" min="0"
-           help="Percentage of bases in the read that must have quality equal to or higher than the cut-off value" />
+           help="Percentage of bases in the read that must have quality equal to or higher than the cutoff value" />
 
     <conditional name="trimming">
       <param name="sequence_trimming" type="boolean" truevalue="true" falsevalue="false" checked="False" label="Trim reads"/>
@@ -147,13 +147,13 @@
 #. Sampling (optional)         
 #. Interlacing two fasta files
 
-**Quality setting cut-off**
+**Quality setting cutoff**
 
-To correctly set quality cut-off, you need to know how the quality is encoded in your fastq file, default
+To correctly set quality cutoff, you need to know how the quality is encoded in your fastq file, default
 filtering which is suitable for Sanger and Illumina 1.8 encoding is shown below::
 
 
-      Default filtering cut-off
+      Default filtering cutoff
                 |   
                 |
                 V
diff -r c2c69c6090f0 -r 768883847008 single_fastq_filtering.xml
--- a/single_fastq_filtering.xml	Fri Jan 31 06:55:23 2020 -0500
+++ b/single_fastq_filtering.xml	Mon Feb 03 06:44:58 2020 -0500
@@ -46,9 +46,9 @@
       </when>
     </conditional>
 
-    <param type="integer" name="cut_off" label="Quality cut-off" value="10" min="0" help="See below how to correctly set the quality cut-off" />
+    <param type="integer" name="cut_off" label="Quality cutoff" value="10" min="0" help="See below how to correctly set the quality cutoff" />
     <param type="integer" name="percent_above" label="Percent above cutoff" value="95" min="0"
-           help="Percentage of bases in the read that must have quality equal to or higher than the cut-off value" />
+           help="Percentage of bases in the read that must have quality equal to or higher than the cutoff value" />
 
     <conditional name="trimming">
       <param name="sequence_trimming" type="boolean" truevalue="true" falsevalue="false" checked="False" label="Trim reads"/>
@@ -136,13 +136,13 @@
 #. Sampling (optional)         
 #. Interlacing two fasta files
 
-**Quality setting cut-off**
+**Quality setting cutoff**
 
-To correctly set quality cut-off, you need to know how the quality is encoded in your fastq file, default
+To correctly set quality cutoff, you need to know how the quality is encoded in your fastq file, default
 filtering which is suitable for Sanger and Illumina 1.8 encoding is shown below::
 
 
-      Default filtering cut-off
+      Default filtering cutoff
                 |   
                 |
                 V