# HG changeset patch # User petr-novak # Date 1690980316 0 # Node ID 93595f42a04d66b89a5fb6fc126ee255abf15ae7 # Parent 5dba804e68844cba900be8d23c8cd27df1107233 planemo upload commit 20bdf879b52796d3fb251a20807191ff02084d3c-dirty diff -r 5dba804e6884 -r 93595f42a04d extract_contigs_from_archive.xml --- a/extract_contigs_from_archive.xml Wed Aug 02 12:42:08 2023 +0000 +++ b/extract_contigs_from_archive.xml Wed Aug 02 12:45:16 2023 +0000 @@ -4,6 +4,7 @@ unzip -p ${RepeatExplorer_archive} contigs.fasta > ${contigs} && mkdir -p tempdir + && unzip ${RepeatExplorer_archive} "*.aln" -d tempdir && find tempdir -type f -name "*.aln" -exec cat {} + > ${aln}