# HG changeset patch
# User petr-novak
# Date 1690981787 0
# Node ID ba970b24e48cf600cc8d91214df8bbec0a9c59b7
# Parent  eefed7a82001fd1e4bc30f1de41e60c035f7ed9a
planemo upload commit 20bdf879b52796d3fb251a20807191ff02084d3c-dirty

diff -r eefed7a82001 -r ba970b24e48c extract_files_from_re_archive.xml
--- a/extract_files_from_re_archive.xml	Wed Aug 02 12:59:29 2023 +0000
+++ b/extract_files_from_re_archive.xml	Wed Aug 02 13:09:47 2023 +0000
@@ -8,24 +8,33 @@
     #for $sf in $file:
     #if $sf == "CLUSTER_TABLE.csv"
     mkdir -p tempdir
+    &&
     unzip ${RepeatExplorer_archive} ${sf} -d tempdir
+    &&
     find tempdir -type f -name "${sf}" -exec cat {} + > ${cluster_table}
+    &&
     rm -r tempdir
     ;
     #end if
 
     #if $sf == "COMPARATIVE_ANALYSIS_COUNTS.csv"
     mkdir -p tempdir
+    &&
     unzip ${RepeatExplorer_archive} ${sf} -d tempdir
+    &&
     find tempdir -type f -name "${sf}" -exec cat {} + > ${comparative_analysis_count}
+    &&
     rm -r tempdir
     ;
     #end if
 
     #if $sf == "SUPERCLUSTER_TABLE.csv"
     mkdir -p tempdir
+    &&
     unzip ${RepeatExplorer_archive} ${sf} -d tempdir
+    &&
     find tempdir -type f -name "${sf}" -exec cat {} + > ${supercluster_table}
+    &&
     rm -r tempdir
     #end if