# HG changeset patch
# User petr-novak
# Date 1691052038 0
# Node ID cab41d23e2a3e9a16aa30e94c2ad2720b1906f2a
# Parent  53dc6aef5441306476f5cd67c98834a7ba7dd119
planemo upload commit 20bdf879b52796d3fb251a20807191ff02084d3c-dirty

diff -r 53dc6aef5441 -r cab41d23e2a3 cluster_table2krona_format.xml
--- a/cluster_table2krona_format.xml	Thu Aug 03 07:32:40 2023 +0000
+++ b/cluster_table2krona_format.xml	Thu Aug 03 08:40:38 2023 +0000
@@ -1,4 +1,7 @@
 <tool id="cluster_table2krona_format" name="Convert RepeatExplorer2 CLUSTER_table.csv to Krona formatted input " version="1.0.0.3" python_template_version="3.5">
+    <requirements>
+        <requirement type="package" version="3">python</requirement>
+    </requirements>
     <required_files>
         <include type="literal" path="cluster_table2krona_format.py"/>
     </required_files>
diff -r 53dc6aef5441 -r cab41d23e2a3 extract_files_from_re_archive.xml
--- a/extract_files_from_re_archive.xml	Thu Aug 03 07:32:40 2023 +0000
+++ b/extract_files_from_re_archive.xml	Thu Aug 03 08:40:38 2023 +0000
@@ -1,5 +1,5 @@
 <tool id="extract_var_files_from_re"
-      name="Extract various files from RepeatExplorer2 archive" version="1.0.0.3">
+      name="Extract various files from RepeatExplorer2 archive" version="1.0.0.4">
     <command detect_errors="exit_code">
         <![CDATA[
 
diff -r 53dc6aef5441 -r cab41d23e2a3 fasta_affixer.xml
--- a/fasta_affixer.xml	Thu Aug 03 07:32:40 2023 +0000
+++ b/fasta_affixer.xml	Thu Aug 03 08:40:38 2023 +0000
@@ -1,5 +1,8 @@
-<tool id="fasta_affixer" name="FASTA read name affixer" version="1.0.0.3">
+<tool id="fasta_affixer" name="FASTA read name affixer" version="1.0.0.4">
     <description>Appending suffix and prefix to the read names</description>
+    <requirements>
+        <requirement type="package" version="3">python</requirement>
+    </requirements>
     <required_files>
         <include type="literal" path="fasta_affixer.py"/>
     </required_files>
diff -r 53dc6aef5441 -r cab41d23e2a3 fasta_interlacer.xml
--- a/fasta_interlacer.xml	Thu Aug 03 07:32:40 2023 +0000
+++ b/fasta_interlacer.xml	Thu Aug 03 08:40:38 2023 +0000
@@ -1,5 +1,8 @@
-<tool id="fasta_interlacer" name="FASTA interlacer" version="1.0.0.3">
+<tool id="fasta_interlacer" name="FASTA interlacer" version="1.0.0.4">
     <description>Join pared reads into single file</description>
+    <requirements>
+        <container type="package" version="3">python</container>
+    </requirements>
     <required_files>
         <include type="literal" path="fasta_interlacer.py"/>
     </required_files>
diff -r 53dc6aef5441 -r cab41d23e2a3 fastq_name_affixer.xml
--- a/fastq_name_affixer.xml	Thu Aug 03 07:32:40 2023 +0000
+++ b/fastq_name_affixer.xml	Thu Aug 03 08:40:38 2023 +0000
@@ -1,5 +1,8 @@
-<tool id="names_affixer" name="FASTQ Read name affixer" version="1.0.0.3">
+<tool id="names_affixer" name="FASTQ Read name affixer" version="1.0.0.4">
     <description>Tool appending suffix and prefix to sequences names</description>
+    <requirements>
+        <requirement type="package" version="3">python</requirement>
+    </requirements>
     <required_files>
         <include type="literal" path="name_affixer.py"/>
     </required_files>
diff -r 53dc6aef5441 -r cab41d23e2a3 pairScan.xml
--- a/pairScan.xml	Thu Aug 03 07:32:40 2023 +0000
+++ b/pairScan.xml	Thu Aug 03 08:40:38 2023 +0000
@@ -2,6 +2,7 @@
 <tool id="pairScan" name="Scan paired-end reads for overlap" version="1.0.0.3">
   <description> Scan paired-end reads for overlap </description>
   <requirements>
+    <container type="package" version="3">python</container>
     <requirement type="package">python-levenshtein</requirement>
   </requirements>
   <required_files>
diff -r 53dc6aef5441 -r cab41d23e2a3 renameSequences.xml
--- a/renameSequences.xml	Thu Aug 03 07:32:40 2023 +0000
+++ b/renameSequences.xml	Thu Aug 03 08:40:38 2023 +0000
@@ -2,6 +2,9 @@
     <description>Rename sequences using numerical counter, keep required prefix and pair
         information
     </description>
+    <requirements>
+        <requirement type="package" version="3">python</requirement>
+    </requirements>
     <required_files>
         <include type="literal" path="renameSequences2.py"/>
     </required_files>