comparison repeat_annotate_custom.xml @ 12:755a4d643184 draft default tip

planemo upload commit a61591d548f42ff417781e7fe7418dc2901ccc23

11:5366d5ea04bc

<tool id="repeat_annotate" name="Library Based Assembly Annotation" version="0.1.6" python_template_version="3.5">
    <requirements>
        <requirement type="package" version="4.1.2.p1">repeatmasker</requirement>
        <requirement type="package">bioconductor-rtracklayer</requirement>
    </requirements>
    <required_files>

        <param type="select" label="sensitivity" name="sensitivity" >
            <option value="default" selected="true" >Default sensitivity </option>
            <option value="-s">Slow search, more sensitive </option>
            <option value="-q">Quick search, less sensitive </option>
        </param>
        <param argument="-nolow" type="boolean" truevalue="" falsevalue="-nolow" checked="false" label="Perform masking of low complexity and simple repeats" />
    </inputs>
    <outputs>
        <data name="output1" format="gff3"  label="Repeat Annotation (GFF3) on ${on_string}"/>
        <data name="output2" format="tabular" label="Raw output from RepeatMasker on ${on_string}" />
    </outputs>

12:755a4d643184

<tool id="repeat_annotate" name="Library Based Assembly Annotation" version="0.1.7" python_template_version="3.5">
    <requirements>
        <requirement type="package" version="4.1.2.p1">repeatmasker</requirement>
        <requirement type="package">bioconductor-rtracklayer</requirement>
    </requirements>
    <required_files>

        <param type="select" label="sensitivity" name="sensitivity" >
            <option value="default" selected="true" >Default sensitivity </option>
            <option value="-s">Slow search, more sensitive </option>
            <option value="-q">Quick search, less sensitive </option>
        </param>
        <param argument="-nolow" type="boolean" truevalue="" falsevalue="-nolow" checked="true" label="Perform masking of low complexity and simple repeats" />
    </inputs>
    <outputs>
        <data name="output1" format="gff3"  label="Repeat Annotation (GFF3) on ${on_string}"/>
        <data name="output2" format="tabular" label="Raw output from RepeatMasker on ${on_string}" />
    </outputs>