Mercurial > repos > petr-novak > repeatexplorer2
changeset 6:335d138b654b draft
Uploaded
| author | petr-novak |
|---|---|
| date | Fri, 27 May 2022 12:00:40 +0000 |
| parents | febc137b9826 |
| children | 65d1a27e9339 |
| files | repex_full_clustering.xml repex_tarean.xml tool_dependencies.xml |
| diffstat | 3 files changed, 6 insertions(+), 6 deletions(-) [+] |
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--- a/repex_full_clustering.xml Wed Apr 29 07:03:31 2020 -0400 +++ b/repex_full_clustering.xml Fri May 27 12:00:40 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="repeatexplorer2" name="RepeatExplorer2 clustering: " version="2.3.8" > +<tool id="repeatexplorer2" name="RepeatExplorer2 clustering: " version="2.3.8.1" > <stdio> <regex match="lastdb: can't open file: NEAR" source="stderr" level="fatal" description="Version of last is too old, use ver 956 or higher\n" /> <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" /> @@ -30,7 +30,7 @@ <requirement type="package">r-rsqlite</requirement> <requirement type="package">r-rserve</requirement> <requirement type="package">bioconductor-biostrings</requirement> - <requirement type="package" version="2.3.8">repex_tarean</requirement> + <requirement type="package" version="2.3.8.1">repex_tarean</requirement> <requirement type="set_environment">REPEX</requirement> <requirement type="set_environment">REPEX_VERSION</requirement> <requirement type="package" version="0.9.1" >pyrserve</requirement>
--- a/repex_tarean.xml Wed Apr 29 07:03:31 2020 -0400 +++ b/repex_tarean.xml Fri May 27 12:00:40 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="tarean" name="Tandem Repeat Analyzer" version="2.3.8" > +<tool id="tarean" name="Tandem Repeat Analyzer" version="2.3.8.1" > <stdio> <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" /> <regex match="error" source="stderr" level="fatal" description="Unknown error" /> @@ -28,7 +28,7 @@ <requirement type="package">r-rsqlite</requirement> <requirement type="package">r-rserve</requirement> <requirement type="package">bioconductor-biostrings</requirement> - <requirement type="package" version="2.3.8">repex_tarean</requirement> + <requirement type="package" version="2.3.8.1">repex_tarean</requirement> <requirement type="set_environment">REPEX</requirement> <requirement type="set_environment">REPEX_VERSION</requirement> <requirement type="package" version="0.9.1">pyrserve</requirement>
--- a/tool_dependencies.xml Wed Apr 29 07:03:31 2020 -0400 +++ b/tool_dependencies.xml Fri May 27 12:00:40 2022 +0000 @@ -1,7 +1,7 @@ <?xml version="1.0" ?> <tool_dependency> - <package name="repex_tarean" version="2.3.8"> - <repository changeset_revision="268dfbe97f93" name="package_repex_tarean_2_3_8" owner="petr-novak" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"/> + <package name="repex_tarean" version="2.3.8.1"> + <repository name="package_repex_tarean_2_3_8_1" owner="petr-novak" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b876ecefd6d8"/> <readme> prepare repex database and scripts </readme>