Mercurial > repos > petr-novak > repeatexplorer2_cerit

diff repex_tarean.xml @ 8:a93b7e080db4 draft default tip

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Uploaded
author petr-novak
date Wed, 22 May 2024 11:48:36 +0000
parents ed5a72d4693d
children
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--- a/repex_tarean.xml	Wed May 22 11:48:16 2024 +0000
+++ b/repex_tarean.xml	Wed May 22 11:48:36 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="tarean" name="Tandem Repeat Analyzer"  version="2.3.8.1" >
+<tool id="tarean" name="Tandem Repeat Analyzer"  version="2.3.8.2" >
     <stdio>
       <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" />
       <regex match="error" source="stderr" level="fatal" description="Unknown error" />
@@ -55,7 +55,7 @@
     cat stderr.log >> ${log} &amp;&amp;
     \${REPEX}/stderr_filter.py stderr.log &amp;&amp;
     cd tarean_output &amp;&amp;
-    zip -r  ${ReportArchive}.zip * &amp;&amp;
+    zip -fz -r  ${ReportArchive}.zip * &amp;&amp;
     mv ${ReportArchive}.zip ${ReportArchive} &amp;&amp;
     cp index.html ${ReportFile} &amp;&amp;
     mkdir ${ReportFile.files_path} &amp;&amp;