comparison repex_full_clustering.xml @ 15:15185fe48bf8 draft

Uploaded

14:ba67036e6b3c

<tool id="repeatexplorer2" name="RepeatExplorer2 clustering: " version="2.3.8.2" >
    <stdio>
      <regex match="lastdb: can't open file: NEAR" source="stderr" level="fatal" description="Version of last is too old, use ver 956 or higher\n" />
      <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" />
      <regex match="error" source="stderr" level="fatal" description="Unknown error" />
      <regex match="Warning" source="stderr" level="warning" description="Unknown error" />

 
  <conditional name="read_sampling">
    <param name="do_sampling" type="boolean" truevalue="true" falsevalue="false" checked="False" label="Read sampling" help="Use this option if you want to analyze only a part of the reads" />
    <when value="false">
      <!-- pass -->
      <param name="sample" label="Sample size" hidden="True" type="integer" value="0" help="Number of analyzed reads"/>
    </when>
    <when value="true">
      <param name="sample" label="Sample size" type="integer" value="500000" min="10000" help="Number of analyzed reads"/>
    </when>
  </conditional>

15:15185fe48bf8

<tool id="repeatexplorer2" name="RepeatExplorer2 clustering: " version="2.3.8.3" >
    <stdio>
      <regex match="lastdb: can't open file: NEAR" source="stderr" level="fatal" description="Version of last is too old, use ver 956 or higher\n" />
      <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" />
      <regex match="error" source="stderr" level="fatal" description="Unknown error" />
      <regex match="Warning" source="stderr" level="warning" description="Unknown error" />

 
  <conditional name="read_sampling">
    <param name="do_sampling" type="boolean" truevalue="true" falsevalue="false" checked="False" label="Read sampling" help="Use this option if you want to analyze only a part of the reads" />
    <when value="false">
      <!-- pass -->
      <param name="sample" label="Sample size" type="hidden" value="0" help="Number of analyzed reads"/>
    </when>
    <when value="true">
      <param name="sample" label="Sample size" type="integer" value="500000" min="10000" help="Number of analyzed reads"/>
    </when>
  </conditional>