comparison repex_full_clustering.xml @ 20:19a3d199db8f draft

Uploaded

19:3d0ba5734776

<tool id="repeatexplorer2" name="RepeatExplorer2 clustering: " version="2.3.9.1" >
    <stdio>
      <regex match="lastdb: can't open file: NEAR" source="stderr" level="fatal" description="Version of last is too old, use ver 956 or higher\n" />
      <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" />
      <regex match="error" source="stderr" level="fatal" description="Unknown error" />
      <regex match="Warning" source="stderr" level="warning" description="Unknown error" />
      <exit_code range="1:" level="fatal" description="Error" />
    </stdio>
    <description>Improved version or repeat discovery and characterization using graph-based sequence clustering</description>
   <requirements>
     <container type="singularity">library://repeatexplorer/default/repex_tarean:0.3.9-579a65d</container>
   </requirements>
<command>
      export PYTHONHASHSEED=0;
      export TAREAN_CPU=\$GALAXY_SLOTS;
      export TAREAN_MAX_MEM=\$((GALAXY_MEMORY_MB*1024));

20:19a3d199db8f

<tool id="repeatexplorer2" name="RepeatExplorer2 clustering: " version="2.3.10.1" >
    <stdio>
      <regex match="lastdb: can't open file: NEAR" source="stderr" level="fatal" description="Version of last is too old, use ver 956 or higher\n" />
      <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" />
      <regex match="error" source="stderr" level="fatal" description="Unknown error" />
      <regex match="Warning" source="stderr" level="warning" description="Unknown error" />
      <exit_code range="1:" level="fatal" description="Error" />
    </stdio>
    <description>Improved version or repeat discovery and characterization using graph-based sequence clustering</description>
   <requirements>
     <container type="singularity">library://repeatexplorer/default/repex_tarean:0.3.10-a11bf65</container>
   </requirements>
<command>
      export PYTHONHASHSEED=0;
      export TAREAN_CPU=\$GALAXY_SLOTS;
      export TAREAN_MAX_MEM=\$((GALAXY_MEMORY_MB*1024));