Mercurial > repos > petr-novak > repeatexplorer2_testing

comparison repex_full_clustering.xml @ 9:319156f85093 draft

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author petr-novak
date Mon, 10 Jul 2023 10:22:18 +0000
parents 3b744b24ce50
children 3c121bee9253
comparison
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8:3b744b24ce50 9:319156f85093
36 echo "STDERR CONTENT:" >> ${log}; 36 echo "STDERR CONTENT:" >> ${log};
37 cat stderr.log >> ${log} && 37 cat stderr.log >> ${log} &&
38 /opt/repex_tarean/stderr_filter.py stderr.log && 38 /opt/repex_tarean/stderr_filter.py stderr.log &&
39 cd tarean_output && 39 cd tarean_output &&
40 zip -r ${ReportArchive}.zip * && 40 zip -r ${ReportArchive}.zip * &&
41 mv -p ${ReportArchive}.zip ${ReportArchive} && 41 mv ${ReportArchive}.zip ${ReportArchive} &&
42 cp index.html ${ReportFile} && 42 cp index.html ${ReportFile} &&
43 mkdir ${ReportFile.files_path} && 43 mkdir -p ${ReportFile.files_path} &&
44 cp -r --parents libdir ${ReportFile.files_path} && 44 cp -r --parents libdir ${ReportFile.files_path} &&
45 cp -r --parents seqclust/clustering/superclusters ${ReportFile.files_path} && 45 cp -r --parents seqclust/clustering/superclusters ${ReportFile.files_path} &&
46 cp -r --parents seqclust/clustering/clusters ${ReportFile.files_path} && 46 cp -r --parents seqclust/clustering/clusters ${ReportFile.files_path} &&
47 cp seqclust/clustering/hitsort.cls ${ReportFile.files_path}/seqclust/clustering/hitsort.cls && 47 cp seqclust/clustering/hitsort.cls ${ReportFile.files_path}/seqclust/clustering/hitsort.cls &&
48 cp *.png ${ReportFile.files_path}/ && 48 cp *.png ${ReportFile.files_path}/ &&