comparison repex_tarean.xml @ 21:84106349d4b1 draft

Uploaded

20:19a3d199db8f

<tool id="tarean" name="Tandem Repeat Analyzer"  version="2.3.9.1" >
    <stdio>
      <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" />
      <regex match="error" source="stderr" level="fatal" description="Unknown error" />
      <regex match="warning" source="stderr" level="warning" description="Unknown warning" />
      <exit_code range="1:" level="fatal" description="Error" />
    </stdio>
    <description>Identification of genomic tandem repeats from NGS data</description>
   <requirements>
     <container type="singularity">library://repeatexplorer/default/repex_tarean:0.3.9-579a65d</container>
   </requirements>
  <command detect_errors="exit_code">
    export PYTHONHASHSEED=0;
    export TAREAN_CPU=\$GALAXY_SLOTS;
    export TAREAN_MAX_MEM=\$((GALAXY_MEMORY_MB*1024));

21:84106349d4b1

<tool id="tarean" name="Tandem Repeat Analyzer (TAREAN)"  version="2.3.10.1" >
    <stdio>
      <regex match="Traceback" source="stderr" level="fatal" description="Unknown error" />
      <regex match="error" source="stderr" level="fatal" description="Unknown error" />
      <regex match="warning" source="stderr" level="warning" description="Unknown warning" />
      <exit_code range="1:" level="fatal" description="Error" />
    </stdio>
    <description>Identification of genomic tandem repeats from NGS data</description>
   <requirements>
     <container type="singularity">library://repeatexplorer/default/repex_tarean:0.3.10-a11bf65</container>
   </requirements>
  <command detect_errors="exit_code">
    export PYTHONHASHSEED=0;
    export TAREAN_CPU=\$GALAXY_SLOTS;
    export TAREAN_MAX_MEM=\$((GALAXY_MEMORY_MB*1024));