Mercurial > repos > petr-novak > repeatexplorer2_testing
diff repex_full_clustering.xml @ 5:397394c00bf7 draft
Uploaded
| author | petr-novak |
|---|---|
| date | Fri, 09 Apr 2021 08:09:53 +0000 |
| parents | 72c028e3e70e |
| children | 4b3af335dca8 |
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--- a/repex_full_clustering.xml Thu Apr 08 10:31:53 2021 +0000 +++ b/repex_full_clustering.xml Fri Apr 09 08:09:53 2021 +0000 @@ -130,7 +130,28 @@ </when> </conditional> - + <conditional name="queue_definition"> + <param name="queue_select" type="select" label="Select queue"> + <option value="basic_fast_queue">basic (max runtime 2 days, 4 GB RAM)</option> + <option value="long_slow_queue">long (max runtime 2 weeks, 64 GB RAM)</option> + <option value="extra_long_slow_queue">extra long (max runtime 4 weeks, 64 GB RAM)</option> + </param> + <when value="basic_fast_queue"> + <param name="queue_specification" type="text" label="Modify parameters (optional)" + value="-l select=1:ncpus=10:mem=32gb:scratch_local=50gb -l walltime=48:00:00 -q elixirre@pbs.elixir-czech.cz -v TAREAN_MAX_MEM=4000000,TAREAN_CPU=4" /> + </when> + + <when value="long_slow_queue"> + <param name="queue_specification" type="text" label="Modify parameters (optional)" + value="-l select=1:ncpus=16:mem=112gb:scratch_local=50gb -l walltime=336:00:00 -q elixirre@pbs.elixir-czech.cz -v TAREAN_MAX_MEM=64000000,TAREAN_CPU=15" /> + </when> + <when value="extra_long_slow_queue"> + <param name="queue_specification" type="text" label="Modify parameters (optional)" + value="-l select=1:ncpus=16:mem=112gb:scratch_local=50gb -l walltime=720:00:00 -q elixirre@pbs.elixir-czech.cz -v TAREAN_MAX_MEM=64000000,TAREAN_CPU=15" /> + </when> + </conditional> + + </inputs> <outputs>